Thursday, August 1, 2013

Ingenol: Behind the scenes


Disappointment, frustration, excitement, setbacks, thrill, and success. It has been a roller-coaster ride, but finally the reward is here. A total synthesis of ingenol from our lab was published online today. The chemistry is all described in the paper, so I will not go into too much detail here. However, I want to highlight some of the key reactions and hurdles we had to overcome to finally being able to publish this work.
Our synthesis starts from commercially available and cheap (+)-3-carene, and in five steps we get to the substrate for the first key reaction, the Pauson-Khand. In order to get enough of the Pauson-Khand product, we needed to optimize this reaction quite a bit, but we can run it on gram-scale now as shown below.


Gram-scale Pauson-Khand reaction

1,2-Addition of MeMgBr to the carbonyl group of the P-K product gives us the so-called cyclase phase end-point.

Happy Christian with 1 gram of cyclase-phase endpoint

The oxidase phase also consists of seven steps, in which we install the four hydroxyl groups and rearrange the tigliane skeleton to give the desired ingenane skeleton.
The most troublesome, frustrating, and time-consuming problem to overcome was the pinacol shift to give the ingenane skeleton.


After 8 months of desperation, numerous shift reactions in one form or the other, a lot of disappointing results, and a ridiculous amount of NMR time to figure out what we got from all these reactions, we still couldn’t get the desired product. In fact, we actually almost abandoned the whole route because we just couldn’t get that shift to work the way we wanted. Eventually, we agreed to start designing another route to ingenol, if we could not get the shift to work by November 1st, 2012.
You may call it insane luck, but on October 24th 2012 we finally hit the sweet spot and got the reaction to work on a model substrate and about a week later on the real system. What a relief! Finally we could move on.
Comparably, the last steps of the synthesis were a much smoother ride. An allylic oxidation, a deprotection, and an elimination step later we eventually had a tiny amount of our first natural product, 20-deoxyingenol, just before Christmas of 2012. About a month later, we finally made ingenol for the first time.
However, it took us another 6 months of optimization and scale-up to get the end result, which was published online on Science Express today.
Especially, the reductive alkylation of the chloro-ketone needed some serious optimization. Initially, we tried to prepare big quantities of the methyl ketone itself which turned out to be very difficult to prepare and handle. We had some really painful weeks where we would run this reaction almost everyday and get out nearly nothing. At some point, Phil suggested to run both steps - reductive methylation and aldol reaction - in one pot (!) without isolating the methyl ketone itself. Initially we had a hard time imagining that this would work but after some optimization we finally arrived at the one-pot methylation aldol procedure.


Frustration after another failed attempt at the reductive methylation

What do you do if you almost go nuts? You do stuff like drawing your team-mates.
Here is Christian’s artistic interpretation of Steve and myself.

So what’s up next? We are currently collecting data for an upcoming full paper, which will cover the side reactions and failed approaches. Furthermore, we are focusing on making analogs of ingenol for pharmacological testing. The key intermediate, the cyclase phase end-point, which is our branch point for analog syntheses is being scaled–up in conjunction with our collaborators at LEO Pharma, developers of Picato® (an ester of ingenol).


Whoever is reading this post, if any, please feel free to comment and ask us questions about the synthesis. We will be more than happy to answer them and give you more insights.

Cheers

Tuesday, July 23, 2013

Scientists Love Adverbs or: What Would This Look Like for Organic Chemists?



Over on his blog, bioinformatician Neil Saunders wrote up a nifty little analysis of adverbs in scientific manuscripts. I wonder how it would look if he had only looked at chemistry papers.


Sunday, July 14, 2013

Lab tacos day!!!

Here are some pictures from the beautiful sunny day...with a lot of beers, tacos and sports.
















Thursday, July 4, 2013

My patriotism is vastly superior to that of Young Brando's

Disclaimer: This isn't from today, according to my camera I took this picture on 3/26/2011. Based on this date, its possibly a copper (II) sulfate wash, but more likely an aqueous workup from a stoichiometric nickel reaction. As for why its three phases, not sure after 2 years. I never had a reason to show anyone this picture until I saw Brando's. Later internet world,  I'm off to a BBQ soon.

The Most Patriotic Thing I Can Do From Here



Happy Fourth of July, everybody. I hope you're enjoying burgers and hot dogs or something.

Wednesday, June 19, 2013

Paying it Forward



Paying it Forward: Inspired by my Apprentice

                When I started in organic chemistry, my mentor agreed to train me on one condition.  That is, that I would unselfishly share all of the skills and knowledge that I obtain with other chemists – so called “paying it forward”.  I always wondered when or if I would be in the position to pass on the skills, tips, and hood tricks that I have collected over the years to an apprentice. I wasn’t sure if or when I’d be a mentor but I just hoped I would do a good job.  After all, I would be teaching someone habits and skills that they will most likely carry with them throughout their career – it’s a big responsibility!  Recently, the time came for me to share my skills and knowledge with a bright young mind.
                For the past couple months, I have had the pleasure of working with a very special young man, Jason Ge.  Jason is a high school student here in San Diego at Westview High School. But he isn’t an ordinary student by any means.  Jason has represented the US in the prestigious International Chemistry Olympiad and can write the mechanism of the Boger Pyridine Synthesis with his eyes closed (No, I’m not kidding!).
                Last week, I came to know that Jason has started his own non-profit organization called “catalyst4success”.  Each day, Jason and his team of fellow high school students travel to surrounding elementary, middle, and high schools where they teach youngsters about chemistry and perform live chemistry “magic shows.”  Thus, Jason is “paying it forward” too.
                Catalyst4success  has reached over 10,000 students this year – just amazing!  They have traveled up and down the coast and have dedicated themselves to reaching as many students as possible. Jason and his team fund the organization through donations but the funds come mostly out of their own pockets.  I didn’t write this posting intended to be a call for donations but “What’s $20 anyway?”  This is a chance for you to “pay it forward” too! You can donate at their website catalyst4success.org – there is a donate tab on the top right of the homepage.
                I was planning on teaching Jason about the importance of being a good mentor and role model to others at the end of his internship…..but it looks like he’s got that one covered.  I hope that Jason will be inspired at the end of his time here – I know that he has inspired me!

Website: catalyst4success.org
Check out this video: http://youtu.be/3wbIP_jWF0s
               

I Took My Mom to See Science Live



“Are you wearing heels?” I asked, and my mother nodded. “Mom, trust me, you don’t want to wear them in lab. You should switch them to some flats.” And she did, rather begrudgingly. My mom was visiting me a few months ago, and for whatever reason, decided that it would be a good idea to experience a full day in a chemistry lab. Not a very good start, I thought, but at least she was sensible enough to wear a comfortable shirt and a pair of jeans.